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Genome Sequencing
March 05, 2023 EDT

The Complete Genome Sequences of Iris sibirica and Iris virginica (Iridaceae, Asparagales)

Kuk-Jeong Chin, Stacy Pirro,
irisviridiplantaegenome
https://doi.org/10.56179/001c.72791
biogenomes
Chin, Kuk-Jeong, and Stacy Pirro. 2023. “The Complete Genome Sequences of Iris Sibirica and Iris Virginica (Iridaceae, Asparagales).” Biodiversity Genomes, March. https:/​/​doi.org/​10.56179/​001c.72791.
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Abstract

We present the complete genome sequences of Iris sibirica and Iris virginica. Illumina sequencing was performed on genetic material from individual cultivated specimens. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via Genbank.

Introduction

The genus Iris contains ~310 species (IPNI 2023). The species in this genus are perennial plants, growing from creeping rhizomes or bulbs. They are often large and colorful, and commonly grown as decorative garden plants. We present the assembled genome sequences from 2 species. Tissue samples were obtained from individual cultivated specimens.

Methods

DNA extraction was performed using the Qiagen DNAeasy genomic extraction kit using the standard process. A paired-end sequencing library was constructed using the Illumina TruSeq kit according to the manufacturer’s instructions. The library was sequenced on an Illumina Hi-Seq platform in paired-end, 2 × 150 bp format. The resulting fastq files were trimmed of adapter/primer sequence and low-quality regions with Trimmomatic v0.33 (Bolger, Lohse, and Usadel 2014). The trimmed sequence was assembled by SPAdes v2.5 (Bankevich et al. 2012) followed by a finishing step using Zanfona (Kieras, O’Neill, and Pirro 2021).

Results and Data Availability

Assembled genome sequences are available via Genbank.

Iris sibirica JAOTRK000000000
Iris virginica JAOTQG000000000

Funding

Funding was provided by Iridian Genomes, grant# IRGEN_RG_2021-1345 Genomic Studies of Eukaryotic Taxa.

Submitted: February 22, 2023 EDT

Accepted: March 05, 2023 EDT

References

Bankevich, Anton, Sergey Nurk, Dmitry Antipov, Alexey A. Gurevich, Mikhail Dvorkin, Alexander S. Kulikov, Valery M. Lesin, et al. 2012. “SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing.” Journal of Computational Biology 19 (5): 455–77. https:/​/​doi.org/​10.1089/​cmb.2012.0021.
Google ScholarPubMed CentralPubMed
Bolger, Anthony M., Marc Lohse, and Bjoern Usadel. 2014. “Trimmomatic: A Flexible Trimmer for Illumina Sequence Data.” Bioinformatics 30 (15): 2114–20. https:/​/​doi.org/​10.1093/​bioinformatics/​btu170.
Google ScholarPubMed CentralPubMed
IPNI. 2023. International Plant Names Index. The Royal Botanic Gardens, Kew, Harvard University Herbaria & Libraries and Australian National Herbarium. http:/​/​www.ipni.org.
Google Scholar
Kieras, M., K. O’Neill, and S. Pirro. 2021. Zanfona, a genome assembly finishing tool for paired-end Illumina reads. https:/​/​github.com/​zanfona734/​zanfona.
Google Scholar

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